DNA methylation in Marchantia polymorpha. Adolfo Aguilar‐Cruz, Daniel Grimanelli, Jim Haseloff and Mario Alberto Arteaga-Vázquez. First published: 28 March 2019. New Phytologist. https://doi.org/10.1111/nph.15818. PDF
Aspects of Epigenetic Regulation in Cereals. Omar Oltehua-Lopez, Ana E Dorantes-Acosta, Mathieu Ingouff, Sophie Lanciano, Olivier Leblanc, Daniel Grimanelli, Marie Mirouze, Mario A Arteaga-Vazquez. 2018. Advances in Botanical Research: Plant Epigenetics Coming of Age for Breeding Applications. 88: 361-386. PDF
Marchantia liverworts as a proxy to plants' basal microbiomes. Alcaraz LD, Peimbert M, Barajas HR, Dorantes-Acosta AE, Bowman JL, Arteaga-Vázquez MA. 2018. Scientific Reports. 8 (1): 12712. doi: 10.1038/s41598-018-31168-0. PDF
Negative regulation of conserved RSL class I bHLH transcription factors evolved independently among land plants. Honkanen S, Thamm A, Arteaga-Vazquez MA, Dolan L. 2018. Elife. 2018 Aug 23;7. pii: e38529. PDF
Loss of CG methylation in Marchantia polymorpha causes disorganization of cell division and reveals unique DNA methylation regulatory mechanisms of non-CG methylation. Ikeda Y, Nishihama R, Yamaoka S, Arteaga-Vazquez MA, Aguilar-Cruz A, Grimanelli D, Pogorelcnik R, Martienssen RA, Yamato KT, Kohchi T, Hirayama T, Mathieu O. 2018. Plant Cell and Physiology. 59(12):2421-2431. PDF
Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, Adam C, Aki SS, Althoff F, Araki T, Arteaga-Vazquez MA, Balasubrmanian S, Barry K, Bauer D, Boehm CR, Briginshaw L, Caballero-Perez J, Catarino B, Chen F, Chiyoda S, Chovatia M, Davies KM, Delmans M, Demura T, Dierschke T, Dolan L, Dorantes-Acosta AE, Eklund DM, Florent SN, Flores-Sandoval E, Fujiyama A, Fukuzawa H, Galik B, Grimanelli D, Grimwood J, Grossniklaus U, Hamada T, Haseloff J, Hetherington AJ, Higo A, Hirakawa Y, Hundley HN, Ikeda Y, Inoue K, Inoue SI, Ishida S, Jia Q, Kakita M, Kanazawa T, Kawai Y, Kawashima T, Kennedy M, Kinose K, Kinoshita T, Kohara Y, Koide E, Komatsu K, Kopischke S, Kubo M, Kyozuka J, Lagercrantz U, Lin SS, Lindquist E, Lipzen AM, Lu CW, De Luna E, Martienssen RA, Minamino N, Mizutani M, Mizutani M, Mochizuki N, Monte I, Mosher R, Nagasaki H, Nakagami H, Naramoto S, Nishitani K, Ohtani M, Okamoto T, Okumura M, Phillips J, Pollak B, Reinders A, Rövekamp M, Sano R, Sawa S, Schmid MW, Shirakawa M, Solano R, Spunde A, Suetsugu N, Sugano S, Sugiyama A, Sun R, Suzuki Y, Takenaka M, Takezawa D, Tomogane H, Tsuzuki M, Ueda T, Umeda M, Ward JM, Watanabe Y, Yazaki K, Yokoyama R, Yoshitake Y, Yotsui I, Zachgo S, Schmutz J. 2017. Cell. 171 (2): 287-304.e15. PDF
Evolution of the Metabolic Network Leading to Ascorbate Synthesis and Degradation Using Marchantia polymorpha as a Model System. Jarrod Creameans, Karina Medina-Jiménez, Tanya Gómez-Díaz, Viankail Cedillo-Castelán, Dulce Flores-Martínez, Adolfo Aguilar-Cruz, Omar Altehua-Lopez, Grecia Lopez-Ramirez, Ana E Dorantes-Acosta, John L Bowman, Argelia Lorence, Mario A Arteaga-Vazquez. 2017. In: Hossain M., Munné-Bosch S., Burritt D., Diaz-Vivancos P., Fujita M., Lorence A. (eds) Ascorbic Acid in Plant Growth, Development and Stress Tolerance. Springer, Cham.URL
The Role of microRNAs in Animal Cell Reprogramming. Cruz-Santos MC, Aragón-Raygoza A, Espinal-Centeno A, Arteaga-Vázquez M, Cruz-Hernández A, Bako L, Cruz-Ramírez A. 2016. Stem Cells and Development. 25 (14): 1035-49. URL
Identification of miRNAs and Their Targets in the Liverwort Marchantia polymorpha by Integrating RNA-Seq and Degradome Analyses. Lin PC, Lu CW, Shen BN, Lee GZ, Bowman JL, Arteaga-Vazquez MA, Liu LY, Hong SF, Lo CF, Su GM, Kohchi T, Ishizaki K, Zachgo S, Althoff F, Takenaka M, Yamato KT, Lin SS. 2016. Plant Cell and Physiology. 57 (2): 339-58. PDF
Land Plant Evolution: Listen to Your Elders. Arteaga-Vazquez MA. 2016. Current Biology. 26 (1): R26-9. PDF
The Naming of Names: Guidelines for Gene Nomenclature in Marchantia. Bowman JL, Araki T, Arteaga-Vazquez MA, Berger F, Dolan L, Haseloff J, Ishizaki K, Kyozuka J, Lin SS, Nagasaki H, Nakagami H, Nakajima K, Nakamura Y, Ohashi-Ito K, Sawa S, Shimamura M, Solano R, Tsukaya H, Ueda T, Watanabe Y, Yamato KT, Zachgo S, Kohchi T. 2016. Plant Cell and Physiology. 57 (2): 257-61. PDF
Ancient Origin and Recent Innovations of RNA Polymerase IV and V. Huang Y, Kendall T, Forsythe ES, Dorantes-Acosta A, Li S, Caballero-Pérez J, Chen X, Arteaga-Vázquez M, Beilstein MA, Mosher RA. 2015. Molecular Biology and Evolution. 32 (7): 1788-99. PDF
A SCARECROW-RETINOBLASTOMA protein network controls protective quiescence in the Arabidopsis root stem cell organizer. Alfredo Cruz-Ramírez, Sara Díaz-Triviño, Guy Wachsman, Yujuan Du, Mario Arteaga-Vázquez, Hongtao Zhang, Rene Benjamins, Ikram Blilou, Anne B Neef, Vicki Chandler, Ben Scheres. 2013. PLoS Biology. 11 (11): e1001724. PDF
Specific Tandem Repeats Are Sufficient for Paramutation-Induced Trans-Generational Silencing. Christiane L. Belele, Lyudmila Sidorenko, Maike Stam, Rechien Bader, Mario A. Arteaga-Vazquez, Vicki L. Chandler. 2013. Specific Tandem Repeats Are Sufficient for Paramutation-Induced Trans-Generational Silencing. PLoS Genetics. 9 (10): e1003773. PDF
Architecture and evolution of a minute plant genome. Enrique Ibarra-Laclette, Eric Lyons, Gustavo Hernández-Guzmán, Claudia Anahí Pérez-Torres, Lorenzo Carretero-Paulet, Tien-Hao Chang, Tianying Lan, Andreanna J Welch, María Jazmín Abraham Juárez, June Simpson, Araceli Fernández-Cortés, Mario Arteaga-Vázquez, Elsa Góngora-Castillo, Gustavo Acevedo-Hernández, Stephan C Schuster, Heinz Himmelbauer, André E Minoche, Sen Xu, Michael Lynch, Araceli Oropeza-Aburto, Sergio Alan Cervantes-Pérez, María de Jesús Ortega-Estrada, Jacob Israel Cervantes-Luevano, Todd P Michael, Todd Mockler, Douglas Bryant, Alfredo Herrera-Estrella, Victor A Albert, Luis Herrera-Estrella. 2013. Nature 498 (7452): 94-98. PDF
Conserved peptide upstream open reading frames are associated with regulatory genes in angiosperms. Richard A. Jorgensen and Ana E. Dorantes-Acosta. 2012. Frontiers in Plant Sciences. 3: 191. PDF
Non-coding RNAs in the plant response to abiotic stress. Cecilia Contreras-Cubas, Miguel Palomar, Mario Arteaga-Vázquez, José Luis Reyes, Alejandra A Covarrubias. 2012. Planta 236 (4): 943-958. URL
Transcriptional analysis of the Arabidopsis ovule by massively parallel signature sequencing. Nidia Sánchez-León, Mario Arteaga-Vázquez, César Alvarez-Mejı́a, Javier Mendiola-Soto, Noé Durán-Figueroa, Daniel Rodrı́guez-Leal, Isaac Rodrı́guez-Arévalo, Vicenta Garcı́a-Campayo, Marcelina Garcı́a-Aguilar, Vianey Olmedo-Monfil, Mario Arteaga-Sánchez, Octavio Martínez de la Vega Kan Nobuta, Kalyan Vemaraju, Blake C. Meyers and Jean-Philippe Vielle-Calzada. 2012. Journal of Experimental Botany 63 (10): 3829-3842. PDF
Biotic stress in plants: life lessons from your parents and grandparents. Ana Elena Dorantes-Acosta, Carla Vanessa Sánchez-Hernández and Mario Alberto Arteaga-Vazquez. 2012. Frontiers in Genetics. 3: 256. PDF
Paramutation in Plants in Epigenetics: a Reference Manual. Mario A Arteaga-Vazquez and Ana E Dorantes-Acosta. 2011. Edited by Jeffrey M. Craig and Nicholas C. Wong. Developmental Epigenetics Group, Murdoch Children's Research Institute, Victoria, Australia Caister Academic Press. URL
RNA-mediated trans-communication can establish paramutation at the b1 locus in maize. Arteaga-Vazquez M, Sidorenko L, Rabanal FA, Shrivistava R, Nobuta K, Green PJ, Meyers BC, Chandler VL. 2010. Proceedings of the Natural Academy of SciencesUSA. 107 (29):12986-91. PDF
Paramutation in maize: RNA mediated trans-generational gene silencing. Arteaga-Vazquez MA, Chandler VL. 2010. Current Opinion in Genetics and Development. 20 (2): 156-63. PDF
Control of female gamete formation by a small RNA pathway in Arabidopsis. Olmedo-Monfil V, Durán-Figueroa N, Arteaga-Vázquez M, Demesa-Arévalo E, Autran D, Grimanelli D, Slotkin RK, Martienssen RA, Vielle-Calzada JP. 2010. Nature. 464 (7288): 628-32. PDF
Embryo and endosperm inherit distinct chromatin and transcriptional states from the female gametes in Arabidopsis. Pillot M, Baroux C, Arteaga-Vazquez MA, Autran D, Leblanc O, Vielle-Calzada JP, Grossniklaus U, Grimanelli D. Plant Cell. 22 (2): 307-20. PDF
A dominant mutation in mediator of paramutation2, one of three second-largest subunits of a plant-specific RNA polymerase, disrupts multiple siRNA silencing processes. Sidorenko L, Dorweiler JE, Cigan AM, Arteaga-Vazquez M, Vyas M, Kermicle J, Jurcin D, Brzeski J, Cai Y, Chandler VL. 2009. PLoS Genetics. 5 (11): e1000725. PDF
Distinct size distribution of endogeneous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant. Nobuta K, Lu C, Shrivastava R, Pillay M, De Paoli E, Accerbi M, Arteaga-Vazquez M, Sidorenko L, Jeong DH, Yen Y, Green PJ, Chandler VL, Meyers BC. 2008. Proceedings of the Natural Academy of Sciences USA. 105 (39): 14958-63. PDF
A spatial dissection of the Arabidopsis floral transcriptome by MPSS. Peiffer JA, Kaushik S, Sakai H, Arteaga-Vazquez M, Sanchez-Leon N, Ghazal H, Vielle-Calzada JP, Meyers BC. 2008. BMC Plant Biology. 8 (1): 43. PDF
A family of microRNAs present in plants and animals. Arteaga-Vázquez M, Caballero-Pérez J, Vielle-Calzada JP. 2006. Plant Cell. 18 (12): 3355-69. PDF